Butternut Squash Chili is hearty and flavorful with tender chicken, soft veggies, and quinoa, all simmered together in the slow cooker.

Overhead image of the Butternut Squash Chili
chelsea

author’s note

The Best Comfort in a Bowl!

The minute the weather starts to cool down, chili goes on repeat at my house. It’s one of my favorite ways to pack in all the good stuff like veggies, beans, and quinoa.

Chilis are great for using up leftovers from the fridge, and they make plenty of extra servings that taste even better the next day. They’re simple to make, easy to change up, and always hit the spot, especially with a big piece of cornbread for dunking.

Here are some of the chili recipes I’ve made and loved over the years: Turkey ChiliChicken ChiliSweet Potato Black Bean ChiliQuinoa Chili, Chicken Taco ChiliCrockpot Chili, and Crockpot White Chicken Chili. Told you—I’m obsessed!

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Process shots-- images of the squash, carrots, onions, garlic, tomato paste, and seasonings being added

Why Sauté First?

This is a slow cooker Butternut Squash Chili, but I always cook a few things first—it really helps with flavor and texture. If your slow cooker has a sauté setting, you won’t even need to use another pan.

Lightly cooking the onion, garlic, spices, tomato paste, and tomatoes brings out a sweet, rich flavor. It also softens the squash, carrots, and onions so they’re nice and soft by the end. If you skip this step, they might still be a little hard.

Shortcuts

For a quicker prep time, use a bag of already cut butternut squash from the produce section of the store. If the pieces are overly large, cut them down a bit so they’ll cook in time for this recipe.

Process shots of Butternut Squash Chili-- images of the diced tomatoes being added, chicken being added, and remaining ingredients being added and mixed together

Ingredients

IngredientSwaps or Tips
Butternut SquashSub with sweet potato or pumpkin. For quicker prep, use pre-cut cubes from the store.
ChickenSwap for ground turkey, shredded rotisserie chicken, or leave out for a vegetarian chili.
QuinoaReplace with rice, farro, or lentils if preferred. Make sure to rinse before adding.
Fire-Roasted TomatoesRegular diced tomatoes work, but add a pinch of smoked paprika for that same depth.
Chili SeasoningUse a packet for convenience or mix up your own blend (chili powder, cumin, cayenne, garlic, onion powder).
CarrotsSub with parsnips or extra squash. They add sweetness and bulk.
Chicken StockVeggie stock works if making this meatless. For thicker chili, reduce the stock slightly.
Process shots-- images of the chicken being removed and shredded and then returned back to the crockpot with cilantro and lime

How To Make Butternut Squash Chili (Tips)

  • Use a 6-quart slow cooker since this recipe makes a full pot of chili.
  • Cook on high heat so the quinoa “pops” and cooks through properly.
  • Cut the chicken into small chunks so it cooks at the same rate as the veggies and quinoa.
  • Go for fire-roasted tomatoes for a smoky, rich flavor without any extra work.
  • Chop squash into even cubes (about ½ inch) so it softens evenly in the slow cooker.

Quick Tip


This butternut squash chili is mild, especially with toppings like cheese, sour cream, or avocado. For less heat, skip the cayenne and cut back the chili powder. If using a seasoning packet, choose a mild blend.

Storage

  • Fridge: Store butternut squash chili in an airtight container for 4–5 days.
  • Freezer: Freeze in containers or bags for up to 3 months. Thaw in the fridge overnight, then reheat on the stove or microwave.

More Butternut Squash Recipes:

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4.88 from 31 votes

Butternut Squash Chili

This nutritious Butternut Squash Chili is bursting with flavor and packed with healthy ingredients, including plenty of veggies, tender shredded chicken, and superfood quinoa.
Prep Time: 15 minutes
Cook Time: 3 hours
Total Time: 3 hours 15 minutes
Servings: 6 servings

Equipment

Ingredients

  • 2 tablespoons olive oil
  • 1 cup diced yellow onion
  • 1 cup diced carrot
  • 1 tablespoon minced garlic
  • 2 cups butternut squash peeled and chopped, see note 1
  • 2 tablespoons tomato paste
  • 1 (1.25-ounce) packet mild chili seasoning mix see note 2
  • 1 teaspoon salt
  • 1/4 teaspoon pepper
  • 1 (14.5-ounce) can fire-roasted diced tomatoes undrained
  • 1 (16-ounce) can chili beans
  • 1 (15.25-ounce) can corn undrained
  • 1 (15.25-ounce) can black beans drained and rinsed
  • 1-1/4 pounds chicken thighs or breasts, see note 3
  • 3/4 cup quinoa
  • 5 cups chicken stock
  • 2 tablespoons lime juice optional
  • 1/4 cup finely chopped cilantro
  • Toppings as desired see note 4

Instructions 

  • Spray a 6-quart slow cooker with nonstick spray. Trim excess fat from the chicken and cut it into 2-inch chunks. Rinse the quinoa in a fine-mesh sieve and set it aside.
  • If your slow cooker has a sauté function, use that; otherwise, heat olive oil in a pot over medium-high heat. Add the onion, carrots, and squash, and sauté until golden, about 5 to 7 minutes. Then, add garlic and sauté until fragrant, about 30 seconds. Stir in the tomato paste, seasoning blend, salt, and pepper. Sauté for another 1–2 minutes until fragrant.
  • Pour in diced tomatoes without draining, mixing well and scraping any browned bits from the bottom of the pan. Transfer this mixture into the slow cooker.
  • Add chili beans, corn, black beans, chicken thighs, quinoa, and chicken stock to the Crock-Pot. Stir thoroughly, ensuring the chicken is submerged in the liquid. Cook on high for 3–4 hours, or until chicken shreds easily (see note 5).
  • Once cooked, remove the chicken and place it in a bowl. Shred the chicken using two forks, then return it to the slow cooker. For a heartier texture, you can also mash some of the squash.
  • Add in the cilantro and lime juice if using. Taste and adjust seasonings, adding more salt or pepper if desired. Ladle into bowls and add desired toppings. Enjoy immediately!
Final step! Please let us know how it was by leaving a review.

Recipe Notes

Note 1: This recipe needs about 1/2 of a medium-sized squash. Be sure to chop the squash into small 1/2-inch pieces so they’ll be tender in time. Take a look at the pictures or video in this roasted butternut squash post for guidance on how to cut your squash.
Note 2: To make your seasoning blend from scratch, combine 1 tablespoon chili powder, 1 teaspoon ground cumin, 1/8 teaspoon cayenne pepper, 1/2 teaspoon onion powder, and 1/2 teaspoon garlic powder.
Note 3: While chicken breasts will work, I highly recommend chicken thighs. The thigh meat becomes exceptionally tender in the slow cooker and shreds quickly and easily.
Note 4: I love to top this chili with sour cream, sharp Cheddar cheese, diced avocado, cilantro, chives, and lime. 
Note 5: Unfortunately, this recipe doesn’t cook well on low. The quinoa needs higher heat to pop and cook through. Each slow cooker is a little different, so the cooking time can vary. Look for chicken that shreds easily, fully cooked quinoa, and tender veggies. The longer this soup cooks, the more liquid the quinoa absorbs.
Storage: For the best flavor, consume within 3–4 days. When reheating, warm it over low heat on the stovetop, adding a splash of chicken stock if necessary. This chili doesn’t freeze well.

Nutrition

Serving: 1serving | Calories: 711kcal | Carbohydrates: 82g | Protein: 38g | Fat: 27g | Saturated Fat: 6g | Polyunsaturated Fat: 7g | Monounsaturated Fat: 12g | Trans Fat: 1g | Cholesterol: 99mg | Sodium: 1079mg | Potassium: 1855mg | Fiber: 19g | Sugar: 15g | Vitamin A: 17071IU | Vitamin C: 26mg | Calcium: 171mg | Iron: 9mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Variations

Variations

  • Want more heat? Add in some diced jalapeños, a can of fire-roasted diced green chilies, and/or increase the cayenne pepper or chili powder
  • Thicker chili. While the quinoa does continue to absorb liquid and thicken this chili as it sits, it’s not super thick. For an ultra-thick chili, use 4 cups chicken stock.

Meet Chelsea


Hello, and welcome to Chelsea’s Messy Apron! I’m Chelsea, the recipe developer, food photographer, and writer behind the site. I’m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping by—I hope you find something delicious to make!

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4.88 from 31 votes

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115 Comments

  1. Christina says:

    I just wanted to let you know that I tried this tonight and it was excellent! I don’t like corn, so I omitted that, and I didn’t have any fajita mix, so I used a few different spices. I am not a big chili fan, so I dumbed down the “hotness” that’s really in fajita mix. I used lentils instead of rice, and I used tomato sauce instead of diced tomatoes. It was really good! We have too much, so I am going to share it with the family. Thanks for the recipe!

    1. chelseamessyapron says:

      LOVE hearing all the creative ways you changed up this soup — I need to try it with lentils 🙂 Sounds awesome! Thanks for the comment!!

  2. Michaela Harris says:

    This looks so good & I love that it’s crock pot friendly! Definitely trying. I totally related to your comment about your husband – last time I made soup I ADDED meat to it but my husband said it needed more meat and sometimes he thought I was a “partial vegetarian” – after adding meat! haha. I do love how hearty the soups are with squash.

  3. Anna says:

    Oh my goodness, I made this soup this week, and it is SO YUMMY! Like, honestly my new favorite soup! 🙂 So easy, so delicious, and will definitely be going on the dinner rotation over at my house!

    1. chelseamessyapron says:

      Totally makes my day!! So glad to hear that!! Thank you so much Anna! 🙂

  4. Jason says:

    5 stars
    I made this today and enjoyed it for my Halloween dinner. Delicious!

    1. chelseamessyapron says:

      What a great way to celebrate Halloween 🙂 Thanks for the comment, I’m glad you enjoyed the soup!

  5. Erin says:

    I’m looking forward to trying this out this weekend! Just wanted to ask, I assume this recipe is for a 4qt Crockpot? I’ve got a smaller 3qt and will have to adjust it.

    1. chelseamessyapron says:

      I actually use a 6 quart, so you may want to halve it 🙂

      1. Erin says:

        Perfect! Thank you 🙂

  6. Kerri says:

    So you don’t cook the chicken or squash before you put it in? I’ve never made a slow cooker soup/chili recipe that doesn’t use already cooked and shredded chicken.

    1. chelseamessyapron says:

      Right! The chicken and squash will cook in the slow cooker which is what makes this recipe so easy!! 🙂

  7. Caroline Tenley says:

    5 stars
    This is literally the best soup I’ve had this year!! Maybe ever!! And I love how healthy it is!!

    1. chelseamessyapron says:

      So great to hear!! Thank you Caroline! 🙂

  8. Rachel says:

    2 stars
    I just made this today, my husband I thought it was a little bland. Was really looking forward to it too

    1. chelseamessyapron says:

      Oh bummer! I’m sad you didn’t love it!! Did you change anything about the recipe?

  9. CiCi Sowers says:

    Soup was delicious! However, mine came out a little mushy in terms of the squash. I think 8 hours on low was a little too long.

    1. chelseamessyapron says:

      Glad to hear you liked it! Thanks for the comment 🙂 Yeah I’ve never had great success cooking these kinds of soups on low for long periods of time so that’s why I suggest high for a shorter period 🙂

  10. Julia says:

    5 stars
    Just made this today and tastes great! What are your thoughts about storing some in the freezer?

    1. chelseamessyapron says:

      So great to hear!! Thank you Julia! I’ve actually never frozen this soup, but I haven’t had great success with freezing and then thawing cooked quinoa in a soup so I’m not sure how it would work out. Sorry to not be of more help.

      1. Julia says:

        Hi Chelsea, just wanted to let you know I had some leftovers frozen for about a week and it still tasted good!

        1. chelseamessyapron says:

          You are so awesome!!! Thanks for coming back and telling your results — it helps so many people!! I appreciate it 🙂