A simple and flavorful Quinoa Enchilada Bake loaded with sweet potato, black beans, and corn. A hearty meatless dinner everyone will enjoy.

Pair this with a simple side dish such as this cucumber salad, this mandarin orange salad, or this Italian salad!

Freshly baked Quinoa Enchilada Bake.

Why I Love This Quinoa Enchilada Bake

  1. Nutritious and Filling: This dish is a protein-packed, vegetarian favorite.
  2. Adaptable for Various Diets: Allows for vegan, dairy-free, and gluten-free options.
  3. Easy to Customize: Options for added meat, spicier flavors, or different vegetables.
  4. Simple to Prepare: Involves roasting, cooking quinoa, and casserole assembly.
  5. Variety of Topping Choices: Offers personalization with toppings like avocado, lime, and sour cream.
Peppers, sweet potatoes and onions with spices being roasted.

Ingredients

IngredientSwap or Tip
Sweet PotatoesSwap with butternut squash for a similar feel.
QuinoaRinse well to remove bitterness. White quinoa works best here.
Black BeansUse pinto beans for a softer, earthier flavor.
CornFrozen corn works fine. Thaw before using.
Enchilada SauceUse your favorite store brand or homemade sauce. Mild or spicy both work.
Cheddar CheesePepper jack or a Mexican cheese blend are great swaps.
Chili Powder + CuminAdjust based on heat preference.

    Quick Tip

    Quinoa, a protein-rich and quick-cooking grain, has a bitter coating called saponin. Rinse it in a fine-mesh strainer before cooking to remove the bitterness.

    Quinoa, vegetables and beans being added to a casserole dish.

    How To Make Quinoa Enchilada Bake

    1. Roast: Sweet potatoes, red pepper, and onion.
    2. Cook Quinoa: In stock or water.
    3. Mix: Roasted veggies, quinoa, corn, beans, sauce, and cheese in a dish.
    4. Bake: Covered, then add cheese and bake until melted.
    5. Garnish: With toppings and serve.
    Corn being added and enchilada sauce being poured over top of the casserole.

    Favorite Toppings On Quinoa Enchilada Bake

    • Fresh and ripe sliced avocado (or guacamole).
    • Fresh pico de gallo (or salsa).
    • Lime juice (served with a few wedges per plate).
    • Cilantro, finely chopped and sprinkled on top.
    • Sour cream (fat-free works great).
    • Tortilla chips (great for dipping).
    Quinoa Enchilada Bake: everything mix and assembled and then the finished shot.

    Storage

    Leftovers

    • Refrigerate: Store quinoa enchilada bake in an airtight container for up to 3-4 days.
    • Freeze: Freeze in a sealed container for up to 2 months. Thaw overnight in the refrigerator.
    • Reheat: Microwave or oven-bake until heated through. Add a bit of water or stock if it seems dry.

    More Quinoa Recipes:

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    5 from 10 votes

    Quinoa Enchilada Bake

    This Quinoa Enchilada Bake with sweet potato, black beans, and corn is a hearty, meatless, protein-packed family favorite!
    Prep Time: 30 minutes
    Cook Time: 30 minutes
    Veggie Cook Time: 30 minutes
    Total Time: 1 hour 30 minutes
    Servings: 4 servings

    Equipment

    Ingredients

    • 1-1/2 pounds sweet potatoes 2 medium potatoes, 5 cups, chopped into bite-sized pieces
    • 1 red pepper chopped
    • 1 small yellow onion thinly sliced
    • 2 tablespoons olive oil
    • 1 teaspoon ground cumin
    • 1/2 teaspoon garlic powder
    • 3 teaspoons chili powder divided
    • 1 cup uncooked white quinoa drained and rinsed
    • 2 cups vegetable stock or broth or water
    • 2 tablespoons fresh lime juice
    • 1 (15-ounce) can fire-roasted corn drained
    • 1 (15-ounce) can black beans drained and rinsed
    • 1 (10-ounce) can mild red enchilada sauce homemade or store-bought—see note 1
    • 1/4 cup chopped cilantro
    • 1-1/2 cups sharp Cheddar cheese divided, see note 2
    • Toppings as desired see note 3
    • Salt and pepper

    Instructions 

    • Preheat oven to 425°F. Peel and chop sweet potatoes into bite-sized pieces. Thinly slice onion and chop the sweet bell pepper. Put all the veggies on a large (15×21-inch) sheet pan or two half-sheet pans. Toss with olive oil, cumin, garlic powder, 1 and 1/2 teaspoons chili powder, and salt and pepper to taste (I add 3/4 teaspoon salt and 1/4 teaspoon pepper). Bake for 15 minutes, flip, and bake another 10–15 minutes. Depending on the size of veggies and the tray size (less space = longer cook time), you may need an additional 5–10 minutes. Potatoes and pepper should be fork tender and onions caramelized and slightly crispy. Remove and set aside to cool. Reduce oven temperature to 350°F.
    • Meanwhile, add quinoa and stock to a small pot. Cook according to package directions, then remove from heat and fluff with a fork. Cover quinoa and set aside.
    • Grease a 9×13-inch baking dish with cooking spray. Pour cooked and fluffed quinoa in the baking dish. Add roasted veggie mix on top and add the drained corn, drained and rinsed black beans, enchilada sauce, remaining 1 and 1/2 teaspoon chili powder, cilantro, 1/2 cup shredded cheese, and salt and pepper to taste. (I add another 1/2 teaspoons salt—add to preference.) Gently stir to combine in the baking dish. Taste and adjust salt and pepper to taste. (You can also add additional chili powder/garlic powder/cumin if desired.)
    • Cover the pan with foil and bake 20–25 minutes. Remove foil, add remaining 1 cup cheese, and bake an additional 7–10 minutes or until cheese is fully melted. Remove from oven and allow to cool slightly. Garnish with your favorite toppings. My must-haves: chopped avocado, sour cream, chopped cilantro, and plenty of lime juice! I love this with tortilla chips too (eating it as a dip)!
    Final step! Please let us know how it was by leaving a review.

    Recipe Notes

    Note 1: Not all enchilada sauces are made equal; I use Old El Paso® throughout the testing of this recipe. You can use a hotter brand of enchilada sauce or make your own to determine the heat. The chili powder does add a bit of additional heat.
    Note 2: A Mexican cheese blend or even pepper jack can be used in place of the sharp Cheddar
    Note 3: Toppings: chopped avocado, sour cream, tortilla chips, additional lime and/or cilantro.
    Storage: Keep Quinoa Enchilada Bake in an airtight container in the fridge for up to 34 days. Freeze in a sealed container for up to 2 months. Thaw overnight in the fridge.

    Nutrition

    Serving: 1serving | Calories: 567kcal | Carbohydrates: 69g | Protein: 20g | Fat: 24g | Saturated Fat: 10g | Cholesterol: 44mg | Sodium: 859mg | Potassium: 981mg | Fiber: 10g | Sugar: 11g | Vitamin A: 26183IU | Vitamin C: 46mg | Calcium: 390mg | Iron: 4mg

    Nutrition information is automatically calculated, so should only be used as an approximation.

    Meet Chelsea


    Hello, and welcome to Chelsea’s Messy Apron! I’m Chelsea, the recipe developer, food photographer, and writer behind the site. I’m passionate about creating simple, reliable, and delicious recipes that anyone can make.

    Thanks for stopping by—I hope you find something delicious to make!

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    5 from 10 votes (1 rating without comment)

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    26 Comments

    1. Karen says:

      5 stars
      Excellent recipe, so flavorful!!

      1. Chelsea says:

        YAY! So happy to hear this! Thanks so much Karen! 🙂

    2. Nicole says:

      I am wondering if you have a recipe for homemade enchilada sauce?

    3. Penny says:

      5 stars
      This is so delicious! I made it as is, and we loved it!

      1. Chelsea says:

        I am so happy to hear this! Thanks Penny! 🙂

    4. Katie says:

      5 stars
      Made this tonight – soooo good! Fed our family of 5 and everyone loved it! Will definitely make it again!

      1. Chelsea Lords says:

        I am thrilled to hear this! Thanks Katie! 🙂

    5. Loved this recipe! says:

      Just wondering how long you can keep in refrigerator for?

      1. Chelsea Lords says:

        I’d say 4-5 days!

    6. Debby says:

      5 stars
      This recipe is a keeper. My kids weren’t crazy about the sweet potatoes, so I will try subbing white potatoes next time. Still way healthier than frozen pizza, right?? For the adults I used Daiya vegan cheddar shreds. Everyone ate a couple of servings, so that is a win.

    7. Lynn says:

      I’m wondering if this can be made ahead, frozen, and thawed and reheated? And if so, what that would look like. Would the roasted veggies get mushy if frozen??? I haven’t cooked much with quinoa…
      Thank you

      1. Suzanne says:

        5 stars
        This recipe freezes exceptionally well and is so yummy. I have successfully frozen it and enjoyed even more when reheated. 😊

        1. Chelsea says:

          I am so happy to hear this! Thanks Suzanne! 🙂

    8. Magan says:

      To be honest…I wasn’t that excited to make this dinner. BUT OH MY GOSH!!! It is sooooo good!!!! My kids truly ate it up! I added ground turkey because—let’s be honest, we aren’t vegan and I wanted some kind of meat. But we couldn’t even taste it. Next time I’ll leave the meat out. This recipe is so flavorFULL! And the sweet potatoes aren’t that noticeable. I had to tell my husband that they were in it! 2 thumbs up for me and my family!

      1. Chelsea Lords says:

        That’s the best thing to hear 🙂 Thanks so much Magan!

    9. Monica says:

      5 stars
      I made half with the sauce and half without (catering to family wishes) and I actually enjoyed it better without. Roasting the veggies was so worth the extra time and mess. Thanks for the great recipe, will be added to my regular rotation!

      1. chelseasmessyapron says:

        I’m soo happy you enjoyed this!! Thanks for your comment! 🙂

    10. AJ says:

      5 stars
      This recipe is AMAZING. It has everything I love in it! Veggie enchiladas without the yucky, gooey tortilla and instead with healthy quinoa! Also I wanted to point out that adding the enchilada sauce in the assemble section is missing. And I am apparently a slow learner because I go over the list and have forgotten to add it twice. So please add it in if only for me lol

      1. chelseamessyapron says:

        Ahh I’m soo glad you enjoyed this! And thank you sooo much for catching that mistake! It’s fixed. Thanks for your comment! 🙂