Carrot Cake Cupcakes Recipe that’s moist, tender, and perfectly spiced, topped with cinnamon cream cheese frosting and crunchy pecans!

Carrot Cake Cupcakes with cream cheese frosting on top.
chelsea

author’s note

My Dad’s Favorite Dessert, EVER!

My dad’s favorite dessert has always been carrot cake. For years, I made it for birthdays, holidays, and just about any excuse I could find. After testing and tweaking the recipe more times than I can count, I finally landed on the version my family loves most.

Once my kids got involved in the kitchen, though, making a full layered cake became a little more… chaotic. Tiny hands tend to move faster than I can keep up with, especially when sugar is involved. So I turned that favorite carrot cake into cupcakes.

These cupcakes have the same soft, moist crumb and cozy spice blend, but they’re easier to mix, bake, and serve. Now my toddler asks to make “carrot cake cupcakes” almost every Sunday, and they disappear just as fast as we can frost them.

signature
Wet and dry ingredients being prepped in separate bowls.

Carrot Cake Cupcakes Recipe Ingredients

IngredientTips or Swaps
Fresh carrots1 Tip: Grate carrots by hand for ultra-moist cupcakes. Store-bought shreds are too big and dry!
ApplesauceUse unsweetened; if you’ve never tried making your own homemade applesauce you need to give it a try!
OilUse vegetable or canola oil
Brown sugarLight or dark brown sugar both work
Warm spicesAdjust cinnamon to taste
Cream cheeseUse full-fat for best texture in the frosting
Wet and dry ingredients being combined and mixed together and then added to a prepared muffin pan to bake.

How To Make This Carrot Cake Cupcakes Recipe

  1. Mix dry ingredients in one bowl.
  2. Beat sugars and eggs until smooth.
  3. Add applesauce, vanilla, and oil.
  4. Stir in carrots and dry ingredients just until combined.
  5. Fill liners and bake until a toothpick comes out clean.
  6. Cool completely, then frost with cinnamon cream cheese frosting.
  7. Finish with pecans if desired.
Carrot Cake Cupcakes in the pan.

chelsea’s recipe tip

How To Know When Cupcakes Are Done:

This carrot cake cupcakes recipe should be slightly domed with golden-brown tops.

Toothpick test: Stick a toothpick in the center—if it comes out clean or with a few soft crumbs, they’re done. No toothpick? Lightly press the top—if it bounces back, they’re ready.

Quick Tip

This recipe makes plenty of frosting for generously topped cupcakes. For less, halve the recipe or use extras as a fruit dip or spread on waffles or pancakes!

Cream cheese frosting being mixed together.

Variations

Switch Things Up

  • Gluten-Free: Use gluten-free flour instead of regular flour.
  • Nuts or Raisins: Put in some chopped nuts or raisins for extra crunch and sweetness.
  • Pineapple: Mix in some crushed pineapple to make the cake moist and fruity.
  • Switch Up The Frosting: Add a plain vanilla frosting or a vanilla/chocolate buttercream on this carrot cake cupcakes recipe.

More Delicious Cupcake Recipes:

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4.88 from 16 votes

Carrot Cake Cupcakes

These easy Carrot Cake Cupcakes are flavored with just the right spices and topped with sweet cinnamon-cream cheese frosting. A sprinkle of pecans adds the perfect finishing touch!
Prep Time: 40 minutes
Cook Time: 20 minutes
Total Time: 1 hour
Servings: 12 cupcakes

Video

Equipment

Ingredients

  • 1-1/3 cups flour spooned and leveled
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon baking powder
  • 1/2 teaspoon salt
  • 1-1/4 teaspoons ground cinnamon
  • 1/4 teaspoon ground nutmeg
  • 1/4 teaspoon ground ginger
  • 1/4 teaspoon ground cloves
  • 2/3 cup light brown sugar packed
  • 1/3 cup granulated sugar
  • 2 large eggs
  • 1/4 cup applesauce unsweetened
  • 3/4 teaspoon vanilla bean paste or 1/2 tablespoon vanilla extract
  • 1/2 cup vegetable oil or canola oil
  • 1-1/2 cups grated carrot see note 1
Cream Cheese Frosting
  • 1/2 cup unsalted butter room temperature
  • 1 (8-ounce) package cream cheese room temperature, do not use low fat
  • 1/2 teaspoon vanilla bean paste or 1 teaspoon vanilla extract
  • 1/8 teaspoon salt
  • 1/4 teaspoon ground cinnamon
  • 3 cups powdered sugar
  • 1/2 cup finely chopped pecans optional

Instructions 

  • Preheat oven to 350°F. Line a 12-cavity muffin pan with cupcake liners and set aside. Set out the cream cheese and butter to get to room temperature.
  • In a medium bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, nutmeg, ginger, and cloves. Set aside.
  • In a separate large mixing bowl, use a mixer to beat together the brown sugar, granulated sugar, and eggs until combined. Mix in applesauce and vanilla extract. With the mixer running at low speed, slowly pour in vegetable oil and mix until combined. Finely shred the carrots on the small side of your grater and measure to ensure you have 1-1/2 cups. Add the dry ingredients right on top of the wet ingredients and the shredded carrots right on top of that. Stir until just combined, be careful to not overmix.
  • Pour batter into the prepared muffin cups, filling each cup about 3/4 full. You should use all the batter among the 12 cavities. Bake in preheated oven for about 18–22 minutes or until a toothpick inserted into the center of the cupcake comes out clean. Cool in the muffin tin for several minutes; transfer to a wire rack and cool completely.

Frosting

  • Using a hand mixer, cream together the room temperature butter and cream cheese on medium-high speed until completely smooth. Mix in vanilla extract, salt, and cinnamon. With mixer running on low speed, slowly add powdered sugar and beat until well blended and smooth. If you’d like a thicker frosting, add a bit more powdered sugar (see note 2). Chill the frosting while the cupcakes finish cooling.
  • Frost completely cooled cupcakes with cream cheese frosting, and if desired, sprinkle crushed pecans on top.
Final step! Please let us know how it was by leaving a review.

Recipe Notes

Note 1: Shredding carrots by hand can be a pain, but you’ll be amazed at how much moisture you get. Pre-shredded carrots are much too large and dry for these cupcakes, and the results won’t be the same.
Note 2: This makes a lot of frosting, enough for each cupcake to have as much frosting as pictured in these photos. If you’d like less frosting, you can halve the recipe.
Storage: Store cupcakes in the fridge, tightly wrapped with plastic wrap, or in a cupcake holder for up to 4 days. The finished and frosted cupcakes don’t freeze and thaw well, but you can freeze unfrosted cupcakes.

Nutrition

Serving: 1serving | Calories: 286kcal | Carbohydrates: 30.5g | Protein: 2.7g | Fat: 17.7g | Cholesterol: 51.3mg | Sodium: 27.8mg | Fiber: 0.9g | Sugar: 18.9g

Nutrition information is automatically calculated, so should only be used as an approximation.

Meet Chelsea


Hello, and welcome to Chelsea’s Messy Apron! I’m Chelsea, the recipe developer, food photographer, and writer behind the site. I’m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping by—I hope you find something delicious to make!

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4.88 from 16 votes (3 ratings without comment)

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72 Comments

  1. Mariin says:

    5 stars
    Love the cupcakes. Realized I didn’t have applesauce so substituted Greek yogurt. My grandchildren loved them and had a serving of carrots!!

    1. Chelsea Lords says:

      So happy you enjoyed these! 🙂

  2. Jessica says:

    How would I adjust this recipe to make a cake instead of cupcakes?

  3. Jen M says:

    5 stars
    I made these exactly as the recipe called for. They were moist & so delicious! Shredding the carrots was a bit of a task. I ended up with carrot purée when I used the smallest part of the grater. May rethink that part next time. The cream cheese frosting was also delicious… decadent & yummy!! Thanks for sharing this recipe!

    1. Chelsea Lords says:

      So thrilled to hear that! Thanks for the comment Jen 🙂

  4. Rebecca says:

    Have you ever tried doubling the recipe to get 24 cupcakes? Just wondering if there would be any issues with doing that. Thank you!

    1. Chelsea Lords says:

      I haven’t personally, but don’t see why it wouldn’t work!

  5. Ravinder says:

    5 stars
    This recipe was amazing !! I do want to know if the frosting will do well with color ? I want to make a tri- color frosting for Easter 🙂

    1. Chelsea Lords says:

      Thank you!! Yes it should be great 🙂

  6. Ravinder says:

    5 stars
    Loved this recipe !! I did have a question though, can I add food coloring to it ? Thinking of making the frosting tri color for Easter !

    1. Chelsea Lords says:

      I think it would be just fine with food dye! 🙂

  7. LindaLuFiberStudio: UPSTAIRS fibers says:

    5 stars
    Are they cupcakes, muffins, who cares!? 🥰They are perfect! I am at 8000 ft, I used my homemade applesauce, reduced leavening a bit, and baked at 360 degrees. Lovely!

    1. Chelsea Lords says:

      Awesome! I’m so glad you enjoyed! Thanks for your comment! 🙂

  8. Leah E says:

    These look sooo good, as do all your recipes-but I don’t have any applesauce – would it work out to substitute the same amount of canned pumpkin puree?

    1. Chelsea Lords says:

      I haven’t tried it so I can’t say for sure, but I think it would work texture wise. Applesauce is naturally a lot sweeter than pumpkin though so you’d end up with a less sweet baked good

  9. Sue says:

    If I want to cook this in a pan instead of cupcakes what size pan should I use?

    1. Chelsea Lords says:

      I’d recommend this carrot cake instead!

  10. Shawn says:

    I’m planning to make the cupcakes on Saturday, frost them on Sunday and take them to work on Monday…. if I keep them in a sealed container in the fridge, am I safe? Or is it risky to frost them in advance?

    1. Chelsea Lords says:

      I personally try to frost as close to possible for serving, but if you have a good airtight cupcake container I think it will be okay! The frosting firms a lot in the fridge so make sure to leave time for it to “thaw” a bit to room temperature so it’s not rock hard!