Carrot Cake Cupcakes Recipe that’s moist, tender, and perfectly spiced, topped with cinnamon cream cheese frosting and crunchy pecans!

Carrot Cake Cupcakes with cream cheese frosting on top.
chelsea

author’s note

My Dad’s Favorite Dessert, EVER!

My dad’s favorite dessert has always been carrot cake. For years, I made it for birthdays, holidays, and just about any excuse I could find. After testing and tweaking the recipe more times than I can count, I finally landed on the version my family loves most.

Once my kids got involved in the kitchen, though, making a full layered cake became a little more… chaotic. Tiny hands tend to move faster than I can keep up with, especially when sugar is involved. So I turned that favorite carrot cake into cupcakes.

These cupcakes have the same soft, moist crumb and cozy spice blend, but they’re easier to mix, bake, and serve. Now my toddler asks to make “carrot cake cupcakes” almost every Sunday, and they disappear just as fast as we can frost them.

signature
Wet and dry ingredients being prepped in separate bowls.

Carrot Cake Cupcakes Recipe Ingredients

IngredientTips or Swaps
Fresh carrots1 Tip: Grate carrots by hand for ultra-moist cupcakes. Store-bought shreds are too big and dry!
ApplesauceUse unsweetened; if you’ve never tried making your own homemade applesauce you need to give it a try!
OilUse vegetable or canola oil
Brown sugarLight or dark brown sugar both work
Warm spicesAdjust cinnamon to taste
Cream cheeseUse full-fat for best texture in the frosting
Wet and dry ingredients being combined and mixed together and then added to a prepared muffin pan to bake.

How To Make This Carrot Cake Cupcakes Recipe

  1. Mix dry ingredients in one bowl.
  2. Beat sugars and eggs until smooth.
  3. Add applesauce, vanilla, and oil.
  4. Stir in carrots and dry ingredients just until combined.
  5. Fill liners and bake until a toothpick comes out clean.
  6. Cool completely, then frost with cinnamon cream cheese frosting.
  7. Finish with pecans if desired.
Carrot Cake Cupcakes in the pan.

chelsea’s recipe tip

How To Know When Cupcakes Are Done:

This carrot cake cupcakes recipe should be slightly domed with golden-brown tops.

Toothpick test: Stick a toothpick in the center—if it comes out clean or with a few soft crumbs, they’re done. No toothpick? Lightly press the top—if it bounces back, they’re ready.

Quick Tip

This recipe makes plenty of frosting for generously topped cupcakes. For less, halve the recipe or use extras as a fruit dip or spread on waffles or pancakes!

Cream cheese frosting being mixed together.

Variations

Switch Things Up

  • Gluten-Free: Use gluten-free flour instead of regular flour.
  • Nuts or Raisins: Put in some chopped nuts or raisins for extra crunch and sweetness.
  • Pineapple: Mix in some crushed pineapple to make the cake moist and fruity.
  • Switch Up The Frosting: Add a plain vanilla frosting or a vanilla/chocolate buttercream on this carrot cake cupcakes recipe.

More Delicious Cupcake Recipes:

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4.88 from 16 votes

Carrot Cake Cupcakes

These easy Carrot Cake Cupcakes are flavored with just the right spices and topped with sweet cinnamon-cream cheese frosting. A sprinkle of pecans adds the perfect finishing touch!
Prep Time: 40 minutes
Cook Time: 20 minutes
Total Time: 1 hour
Servings: 12 cupcakes

Video

Equipment

Ingredients

  • 1-1/3 cups flour spooned and leveled
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon baking powder
  • 1/2 teaspoon salt
  • 1-1/4 teaspoons ground cinnamon
  • 1/4 teaspoon ground nutmeg
  • 1/4 teaspoon ground ginger
  • 1/4 teaspoon ground cloves
  • 2/3 cup light brown sugar packed
  • 1/3 cup granulated sugar
  • 2 large eggs
  • 1/4 cup applesauce unsweetened
  • 3/4 teaspoon vanilla bean paste or 1/2 tablespoon vanilla extract
  • 1/2 cup vegetable oil or canola oil
  • 1-1/2 cups grated carrot see note 1
Cream Cheese Frosting
  • 1/2 cup unsalted butter room temperature
  • 1 (8-ounce) package cream cheese room temperature, do not use low fat
  • 1/2 teaspoon vanilla bean paste or 1 teaspoon vanilla extract
  • 1/8 teaspoon salt
  • 1/4 teaspoon ground cinnamon
  • 3 cups powdered sugar
  • 1/2 cup finely chopped pecans optional

Instructions 

  • Preheat oven to 350°F. Line a 12-cavity muffin pan with cupcake liners and set aside. Set out the cream cheese and butter to get to room temperature.
  • In a medium bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, nutmeg, ginger, and cloves. Set aside.
  • In a separate large mixing bowl, use a mixer to beat together the brown sugar, granulated sugar, and eggs until combined. Mix in applesauce and vanilla extract. With the mixer running at low speed, slowly pour in vegetable oil and mix until combined. Finely shred the carrots on the small side of your grater and measure to ensure you have 1-1/2 cups. Add the dry ingredients right on top of the wet ingredients and the shredded carrots right on top of that. Stir until just combined, be careful to not overmix.
  • Pour batter into the prepared muffin cups, filling each cup about 3/4 full. You should use all the batter among the 12 cavities. Bake in preheated oven for about 18–22 minutes or until a toothpick inserted into the center of the cupcake comes out clean. Cool in the muffin tin for several minutes; transfer to a wire rack and cool completely.

Frosting

  • Using a hand mixer, cream together the room temperature butter and cream cheese on medium-high speed until completely smooth. Mix in vanilla extract, salt, and cinnamon. With mixer running on low speed, slowly add powdered sugar and beat until well blended and smooth. If you’d like a thicker frosting, add a bit more powdered sugar (see note 2). Chill the frosting while the cupcakes finish cooling.
  • Frost completely cooled cupcakes with cream cheese frosting, and if desired, sprinkle crushed pecans on top.
Final step! Please let us know how it was by leaving a review.

Recipe Notes

Note 1: Shredding carrots by hand can be a pain, but you’ll be amazed at how much moisture you get. Pre-shredded carrots are much too large and dry for these cupcakes, and the results won’t be the same.
Note 2: This makes a lot of frosting, enough for each cupcake to have as much frosting as pictured in these photos. If you’d like less frosting, you can halve the recipe.
Storage: Store cupcakes in the fridge, tightly wrapped with plastic wrap, or in a cupcake holder for up to 4 days. The finished and frosted cupcakes don’t freeze and thaw well, but you can freeze unfrosted cupcakes.

Nutrition

Serving: 1serving | Calories: 286kcal | Carbohydrates: 30.5g | Protein: 2.7g | Fat: 17.7g | Cholesterol: 51.3mg | Sodium: 27.8mg | Fiber: 0.9g | Sugar: 18.9g

Nutrition information is automatically calculated, so should only be used as an approximation.

Meet Chelsea


Hello, and welcome to Chelsea’s Messy Apron! I’m Chelsea, the recipe developer, food photographer, and writer behind the site. I’m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping by—I hope you find something delicious to make!

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4.88 from 16 votes (3 ratings without comment)

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72 Comments

  1. Janene says:

    5 stars
    Chelsea!! Thankyou for sharing this recipe!! They are just delicious! made them today, impressed everyone!!
    Super yummy!! ?

    1. Chelsea Lords says:

      So happy to hear it! 🙂 Thanks so much for the comment and review Janene 🙂

  2. Katie says:

    Hello! I am making these cupcakes for a wedding. How would you recommend storing them until tomorrow while still maintaining freshness?

    1. Chelsea Lords says:

      Do you have a cupcake holder? Otherwise I’d do an airtight container in the fridge!

  3. Shahana says:

    WHat can I substitute for applesauce.? I need it urgent!!! Tomorrow isn’t my girl’s bday!!

    1. Chelsea Lords says:

      I haven’t tried anything in place of the applesauce so I can’t say for sure. I think vegetable oil would substitute in nicely

  4. Spencer says:

    Can pineapples be added or substituted for another ingredient?

    1. Chelsea Lords says:

      I’m sure pineapple could work in these, but I really couldn’t say for sure how it would work or how much without personally testing through the recipe 🙂

  5. JORDAN ROLSTON says:

    5 stars
    I love this recipe! and so did my family, but I’m just wondering if i can double everything to make 24 cupcakes, with the same results?

    1. Chelsea Lords says:

      So happy to hear it! 🙂 Although I haven’t personally tried, I don’t see why not 🙂

  6. Megan says:

    Made these for my daughter’s birthday. Delicious! Very moist and the icing was great. Thanks for sharing.

    1. chelseamessyapron says:

      So happy you liked these, thanks Megan! 🙂 Happy birthday to your daughter!

  7. Amy says:

    What size cupcake pan are you using? They don’t appear to be miniature 1 in, so out of three typical commercial sized pans would you say the middle size? Thanks!

    1. chelseamessyapron says:

      Yes the medium size! Thanks! 🙂

  8. Jamie says:

    Hi! In terms of storage for using the next day I want them nice and moist.. so do I store the cupcakes out of the fridge and pipe the icing right before serving?
    Thank you!

    1. chelseamessyapron says:

      That’s what I would do! 🙂 Make sure they are tightly covered/wrapped up and add frosting right before serving! Enjoy 🙂

  9. Shannen says:

    4 stars
    I tried these – cupcakes came out great but my icing was very runny, I followed the recipe and even added a bit extra icing but it just ran off the cake. What could I have done wrong?

    1. chelseamessyapron says:

      Hey Shannen; did you by chance melt the butter or cream cheese at all? And you for sure had the right amount of both?

  10. Andreea says:

    I want to try these, but I am not sure I can find cream cheese. Mascarpone would work?