Healthy Pumpkin Cookies are flourless, free of refined sugar, and made without oils or butter. Mix everything in one bowl and they’re ready in under 30 minutes.

Healthy Pumpkin Cookies fresh out of the oven.
chelsea

author’s note

One Bite = Hooked on These Pumpkin Cookies!

I created these Healthy Pumpkin Cookies one afternoon when I had an open can of pumpkin puree sitting in the fridge and didn’t want it to go to waste. I didn’t feel like making another loaf of bread or muffins, and I was craving something quick, easy, and sweet. That’s when these cookies came together!

I tested them a few different ways. Sometimes with chocolate chips, sometimes with walnuts, and sometimes plain. Every version disappeared fast in my house. My kids even started asking for them in their lunches, which is always the biggest win for me. I love that these cookies feel indulgent but are made with wholesome ingredients I can feel good about.

signature
Ingredients being added to a bowl, mixing to combine, chocolate being added to the dough, then it being rolled and baked.

Ingredients

IngredientSwaps or Tips
Pumpkin PureeUse canned pumpkin, not pumpkin pie filling. If homemade puree is watery, blot with paper towels.
Almond ButterSwap with cashew butter for a mild flavor or peanut butter for a stronger taste.
Maple SyrupHoney works too, though flavor will change slightly.
OatsRolled oats work best. Use certified GF if needed.
SpicesAdjust cinnamon and pumpkin pie spice to your liking.
Dark Chocolate ChipsTry chopped pecans, dried cranberries, or white chocolate chips for a twist.

How To Make Healthy Pumpkin Cookies

  1. Prep: Preheat oven to 350°F and line baking sheets with parchment paper.
  2. Mix wet ingredients: Stir pumpkin, egg yolk, almond butter, maple syrup, vanilla, baking soda, salt, and spices in one bowl.
  3. Add dry: Blend oats into flour, then stir into the bowl.
  4. Fold in extras: Mix in chocolate chips or nuts. Chill dough briefly (about 10 minutes).
  5. Shape & bake: Scoop dough, flatten slightly, and bake 6–7 minutes until tops are just set. Cool on the sheet before enjoying.

More Pumpkin Desserts:

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4.88 from 31 votes

Healthy Pumpkin Cookies

With no refined sugars or flour, these Healthy Pumpkin Cookies are both simple and delicious!
Prep Time: 15 minutes
Cook Time: 6 minutes
Total Time: 21 minutes
Servings: 15 cookies

Equipment

  • 2 Sheet pan (15" x 10") with liners
  • Blender or food processor

Ingredients

  • 2 tablespoons pumpkin
  • 1 large egg yolk discard the egg whites or use in a different recipe
  • 1/2 cup almond butter
  • 1/4 cup maple syrup
  • 1/2 teaspoon vanilla extract
  • 1/2 teaspoon baking soda
  • 1/4 teaspoon salt
  • 1-1/2 teaspoons pumpkin pie spice
  • 1/4 teaspoon ground cinnamon
  • 1/2 cup oat flour old-fashioned or quick oats; oats that have been blended, see note 1
  • 1/2 cup dark chocolate chips coarsely chopped
  • Flaky sea salt optional

Instructions 

  • Preheat oven to 350°F. Line 2 large sheet pans with parchment paper or a nonstick liner and set aside.
  • In a large bowl, add the pumpkin, egg yolk, almond butter, maple syrup, vanilla extract, baking soda, salt, pumpkin pie spice, and ground cinnamon. Mix until smooth.
  • Grind up oats in a blender or food processor until the oats are the texture of regular flour. Make sure to measure the 1/2 cup after grinding the oats so you have a leveled 1/2-cup measure of blended oats. Add to the cookie dough. Mix dough with a wooden spoon or hand mixer until the dough is smooth and well combined.
  • Coarsely chop the chocolate chips and stir into the batter. Cover dough and refrigerate for 10 minutes.
  • Use a tablespoon to scoop out cookie dough balls. It is sticky, so use a finger or another spoon to coax the dough from the spoon onto the prepared trays. Smooth and flatten the tops of the cookie dough balls. Space them about 2 inches apart to fit 8 per tray. Bake, 1 tray at a time, for 6–7 minutes. Cookies should still look very soft; watch carefully to not overbake. As soon as the tops are no longer wet and glossy, they are done.
  • Remove the trays from the oven and let the cookies stand on the cookie sheet for 10 minutes without touching. If desired, press a few more chocolate chips into the tops of the cookies and sprinkle a pinch of sea salt flakes. Then use a metal spatula to transfer the cookies to a cooling rack. These cookies are very fragile and will fall apart right out of the oven if handled while still hot. They set up and solidify as they cool.
Final step! Please let us know how it was by leaving a review.

Recipe Notes

Note 1: Be sure to measure the oats after they’ve been blended—not before. You should have a leveled 1/2 cup of blended oats.
Note 2: This recipe has been modified slightly to completely remove the refined sugars and improve the texture a bit. Here’s the recipe from 2014 if desired.
Safety: Ensure all the products you are using are indeed gluten-free. While all the ingredients listed are naturally gluten-free, they are sometimes made in facilities with gluten. To be safe, always check the labels of what you’re using.
Storage: Keep in an airtight container for up to 3 days, or keep in a sealed container for up to a week. You can also wrap cookies individually and freeze for up to 3 months, thaw at room temperature.

Nutrition

Serving: 15cookies | Calories: 137kcal | Carbohydrates: 14g | Protein: 4g | Fat: 8g | Saturated Fat: 3g | Cholesterol: 12mg | Sodium: 86mg | Potassium: 150mg | Fiber: 2g | Sugar: 6g | Vitamin A: 328IU | Vitamin C: 1mg | Calcium: 62mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Healthy Pumpkin Cookies Tips

  • Press extra chocolate chips on top after baking for picture-worthy cookies.
  • Don’t over-bake: They’re best when just set in the center.
  • Cool completely: These cookies firm up as they cool.
  • Customize add-ins: Pecans, walnuts, or dried fruit all taste amazing.

Storage

  • Room Temperature: Store healthy pumpkin cookies in an airtight container for up to 3 days.
  • Refrigerate: Keep in a sealed container for up to a week for freshness.
  • Freeze: Wrap cookies individually and freeze for up to 3 months; thaw at room temperature.

Meet Chelsea


Hello, and welcome to Chelsea’s Messy Apron! I’m Chelsea, the recipe developer, food photographer, and writer behind the site. I’m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping by—I hope you find something delicious to make!

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113 Comments

  1. Sandy says:

    Hi, I made these they are awesome, was wondering how they do if you freeze them. Want to make them for daughter when she gets here later this month. Thanks you.

    1. chelseamessyapron says:

      I personally haven’t frozen them, but a few other readers have and with great results! Hope that helps!

      1. Sandy says:

        5 stars
        BTW they freeze really well. I Love these, make them all the time. Thank you again.

        1. chelseamessyapron says:

          Thank you SO much for letting us all know how these freeze! I so appreciate that! And thanks for your kind compliment 🙂

  2. zahra says:

    5 stars
    I made these a few days ago and they were amazing,I mean unbelievable for a healthy cookie.although the oat flour I made didn’t look exactly like flour but I guess that’s okay..
    definitly gonna make these again.thanks for the recipe

  3. Sandy says:

    5 stars
    There cookies are wonderful, thanks for the recipe. I did add a pinch of salt and vanilla. My husband LOVES chocolate and pumpkin so I will make many more and try the muffins next. I used my washable coffee grinder to make the oat flour ( first time I’ve ever made flour ) and it worked great. Thanks again.

  4. Cara says:

    These look amaze! I don’t have oat flour in my pantry. Is it really as easy grinding oats in the food processor? I do have coconut flour- do you know if that would work?

    Thanks!!

    1. Victoria says:

      5 stars
      I actually blended mine in the blender….. It was fine 😀

  5. shirley says:

    5 stars
    Running to the store to purchase pumpkin can’t wait to make them and for the heavenly smell of pumpkin baking thru out my house

    1. chelseamessyapron says:

      Yay!! Hope you love these 🙂

  6. Casey says:

    “Flourless* in the title is misleading since there is still oat flour in them. Maybe you could say gluten free or no refined wheat flour? Either way I will definitely be trying these. I use oat flour a lot more now that I cannot have gluten. Thanks for the recipe!

    1. Emily says:

      Oat Flour is just oats ground up in a blender…

  7. Liz says:

    5 stars
    I am amazed at how soft these cookies are! I left them in the oven a little longer because I wasn’t sure if they were done or not but they still have a great soft texture. I ended up using packaged oat flour and a bit less sugar. I also added more spice, chopped walnuts and chia seeds to mine and they were great. Next time I’ll have to try the sea salt on top. Thanks for the recipe!

  8. Michelle says:

    5 stars
    I made these cookies last night! They are heavenly!! Thank you so much for sharing! I’ve shared it with all of my friends on Facebook.

  9. Christy says:

    5 stars
    Oh my, these were delicious! My kids are disappointed they’re gone so I’ll have to make more. As much as I love chocolate I ran out and actually used less than you called for and they were still awesome (which is good, it’s a bit healthier). 🙂 So much fun for fall! Thanks!

  10. Taylor says:

    Have you ever tried using an egg replacer or flax egg with this? This recipe looks great!! Thanks for sharing it.

    1. chelseamessyapron says:

      Hey Taylor! Thank you SO much! I haven’t tried any egg replacers, so I can’t say if it would or wouldn’t work. Sorry to not be or more help; I’d love to hear your results if you do end up giving it a go!

    2. Emmie says:

      Hi Taylor
      Just wondering if you tried these with an egg substitute?